Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015919913.1_cds_XP_016469109.1_61681
CDS Infomation

[gene=LOC107791534] [db_xref=GeneID:107791534] [protein=root phototropism protein 3-like] [protein_id=XP_016469109.1] [location=complement(join(10519..11064,11685..12977,13077..13146,13267..13379))] [gbkey=CDS]
Sequence

ATGTGGGAATCAGAGACTGAGTCTGTCAGTGGAAGAGACTATGGGAATGGAGTTCTCAGC
AGTACCAAACATGGTGTCAAGACTGATGGTTTTGAGCAAAAAGGACAGTCTTGGTATGTA
GCAACTGATATCCCCAGTGACCTTTTAGTTCAAATTGGAGATGTTAGTTTCCACTTACAC
AAGTATCCTTTGCTTTCTAGAAGTGGAAAGATGAACAGAATCATATATGACTCAAGGGAT
GAAGAATTGAGCAAAATAATTTTAGATGACCTACCAGGTGGACCTGAGGCATTTGAGTTA
GCTGCAAAGTTCTGCTATGGAATTGCTGTTGATCTCACAGCAACCAATATCTCCGGCTTA
CGTTGTACAGCAGAGTACCTAGAAATGACTGAGGACTTAGAAGAAGGAAACCTTATATTC
AAGACTGAAGCTTTCCTCAGCTATGTGGTTTTATCATCATGGAGAGACTCCATACAGGTA
TTGAAGAGTTGTGCCAAGTTATCACCATGGGCAGAAAACCTCCAAATCGTTCGAAGATGC
AGCGAGTCCATCGCTTGGAAAGCCTGCGCCAATCCAAAAGGAATAAAATGGCAATACACA
GGCAAACCCCCTAATGTTTCCAGCCCAAAATGGAACGAAATGAAGGATTCTAGCCCGAGC
AGAAACCAGCAAGTAGTACCTCCTGATTGGTGGTTTGAAGATGTGTCTATTCTCAGAATT
GATCACTTTGTCAGAGTGATTACTGCTATTAAGGTAAAGGGTATGAGACATGAACTAATT
GGTGCTGCCCTTATGCACTATGCTGCTAAATGGCTCCCGGGGCTAATTAAAGAAGGATCA
GGATCGCCGGATGAAGGTAGCAATAGCAATAATAGTAATGGCAGTAGCAGCAATAGTTGG
AAAGGGGGTCTTCATATGATAGTGTCAGGAACTAGAGATGAAGTACCAAGTGTTCAGGCC
AAAGATCAAAGGATGATTATCGAAAGCCTAATTAGCATAATCCCACAACAGAAGGACAGC
GTTTCGTGTAGCTTCCTTCTTCGTCTTTTGAGAATGGCAAACCTGTTGAAAGTGGCTCCT
GCTCTTGTGACAGAATTGGAGAAACGGGTCGGGATGCAATTTGAGCAGGCTACATTGGCT
GATCTTCTCATACCGTCCTATAATAAGACTGACACCTTGTATGATGTTGATCTTGTTCAG
AGGCTTTTGGAACATTTCTTAGTTCAAGAACAGACAGAAGGTTCAAGCCCCAGTAGAAGT
TCATTTTCCGATAAACATATGCATGATGGAAATCAAAGAGGTAGCAATCTCAATGCTAAG
ATGAGAGTAGCAAGGCTTGTAGACAGTTACCTCACAGAAGTATCCAGAGATAGAAATCTT
TCCTTGACAAAATTTCAGGTCTTGGCAGAGGCTTTGCCGGAATCAGCAAGAACTTGTGAT
GATGGATTATATCGAGCAATTGATTCCTATCTTAAGGCCCATCCAACTCTCTCCGAACAT
GAAAGAAAGCGGTTGTGCAGGGTGATGGACTGCCAGAAACTCTCTATTGATGCTTGCATG
CACGCTGCTCAGAACGAACGGCTCCCACTAAGAGTAGTGGTGCAAGTCTTATTTTCTGAG
CAGGTGAAGATCAGCAATGCAATATCCAACAACTCACTCAAAGATGCAGGAGATTCTCAT
TATCAACCTCTGGTATCAAATCGCAAATCATTGCTCGAAGCAACACCACAATCATTTCAA
GAGGGATGGACTACAGCCAAGAAAGACATCAATACTCTTAAGTTTGAACTCGAGACTGTT
AAAACTAAGTACCTAGAACTCCAAAACGACATGGATAGCTTACAGAGACAGTTTGATAAG
ATCACAAAGCCAAAGCAATCCTCGGCATGGACTTCAGGGTGGAAAAAGTTAAGCAAACTC
ACCAAGATGACAAATTTAGAATCCCATGAAATTGGTTCGCAGGTCCAAAATGCTGAATTG
ACAAGGAAGACACCTAGAAGATGGAGAAATTCCATTTCCTGA

Peptide Sequence

PEP ID

XP_016469109.1
PEP Infomation

PREDICTED: root phototropism protein 3-like [Nicotiana tabacum]
Sequence

MWESETESVSGRDYGNGVLSSTKHGVKTDGFEQKGQSWYVATDIPSDLLVQIGDVSFHLH
KYPLLSRSGKMNRIIYDSRDEELSKIILDDLPGGPEAFELAAKFCYGIAVDLTATNISGL
RCTAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIQVLKSCAKLSPWAENLQIVRRC
SESIAWKACANPKGIKWQYTGKPPNVSSPKWNEMKDSSPSRNQQVVPPDWWFEDVSILRI
DHFVRVITAIKVKGMRHELIGAALMHYAAKWLPGLIKEGSGSPDEGSNSNNSNGSSSNSW
KGGLHMIVSGTRDEVPSVQAKDQRMIIESLISIIPQQKDSVSCSFLLRLLRMANLLKVAP
ALVTELEKRVGMQFEQATLADLLIPSYNKTDTLYDVDLVQRLLEHFLVQEQTEGSSPSRS
SFSDKHMHDGNQRGSNLNAKMRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCD
DGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSE
QVKISNAISNNSLKDAGDSHYQPLVSNRKSLLEATPQSFQEGWTTAKKDINTLKFELETV
KTKYLELQNDMDSLQRQFDKITKPKQSSAWTSGWKKLSKLTKMTNLESHEIGSQVQNAEL
TRKTPRRWRNSIS

Transcript Sequence

Gene sequence data has not been registered.